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SAMPLE PREPARATION WORKSHOP PRESENTATIONS
BIOINFORMATICS WORKSHOP PRESENTATIONS
USER GROUP MEETING PRESENTATIONS
In Pursuit of Perfect Genome Sequencing
Michael Schatz, Ph.D., Bloomberg Distinguished Associate Professor of Computer Science and Biology, Johns Hopkins University and Cold Spring Harbor Laboratory
Detecting Structural Variants in PacBio Reads – Tools and Applications
Aaron Wenger, Ph.D., Staff Scientist, PacBio
Full-length 16S rRNA Gene Sequencing (and Longer) for Microbiome Analysis
Jethro Johnson, Ph.D., Postdoctoral Associate, The Weinstock Lab, The Jackson Laboratory for Genomic Medicine
SMRT-cappable-seq Reveals the Complex Operome of Bacteria
Bo Yan, Ph.D. Postdoc, New England Biolabs (NEB)
Quantification of CAG Repeat Instability in Huntington’s Disease
Ricardo Mouro Pinto, Ph.D., Instructor in Neurology, Center for Genomic Medicine, Massachusetts General Hospital, Harvard Medical School
Using SMRT Iso-Seq Sequencing to Dissect Polyploid Transcriptomes: Lesson Learned from Tetra- and Hexaploid Blueberries
Hamid Ashrafi, Ph.D., Assistant Professor, Department of Horticultural Science, North Carolina State University
SQANTI: Extensive Characterization of Long-read Transcript Sequences for Quality Control in Full-length Transcriptome Identification and Quantification
Manuel Tardaguila, Ph.D., Department of Microbiology and Cell Science, University of Florida
Consumables Products/Multiplexing Updates
Paul Kotturi, Ph.D., Senior Product Manager, PacBio
Iso-Seq and Target Enrichment Updates
Tyson Clark, Ph.D., Director, Applications Development, PacBio
SMRTbell Library Prep Updates
Sonny Mark, Manager, Field Applications Scientist, PacBio
Software and Data Analysis Updates
Roberto Lleras, Manager, Field Applications Scientist, Bioinformatics, PacBio
BREAKOUT SESSION I
Amplicon Sequencing
Sonny Mark, Manager, Field Applications Scientist, PacBio
Rescuing Ebola Makona Using Reverse Genetics and SMRT Sequencing
David Kimmel, Research Technician, USAMRIID
BREAKOUT SESSION II
Best Practices for Large Insert Libraries and Sequel System Sequencing
Melissa Smith, Ph.D., Assistant Director of Technology Development, Icahn Institute for Genomics and Multiscale Biology, Department of Genetics and Genomics Sciences, Icahn School of Medicine at Mount Sinai
Preparing extra-long DNA fragments for RS II and Sequel applications
Sara Goodwin, Ph.D., Manager of Technology Development, Cold Spring Harbor Laboratory
Microbial Multiplexing 16X Listeria monocytogene
Maria Hoffmann, Ph.D., Research Genome Microbiologist, FDA-CFSAN
Large Insert Library Prep/De Novo Assembly
Sonny Mark, Manager, Field Applications Scientist, PacBio
BREAKOUT SESSION III
Target Enrichment Sequencing
Tyson Clark, Ph.D., Director, Applications Development, PacBio
Iso-Seq Method and Analysis
Tyson Clark, Ph.D., Director, Applications Development, PacBio
BREAKOUT SESSION IV
Service Provider Operations
Overview Slides
Genomics Resource Center Overview
Luke Tallon, Scientific Director, Genomics Resource Center, Institute for Genome Sciences, University of Maryland
Longest Reads and Maximum Output: GENEWIZ’s Best Practices for PacBio Sequel Sequencing
David Corney, Ph.D., Senior Scientist, GENEWIZ
University of Delaware Sequencing & Genotyping Center
Erin Bernberg, Ph.D., Associate Scientist, University of Delaware
Icahn School of Medicine at Mount Sinai Technology Development Team
Melissa Smith, Ph.D., Assistant Director of Technology Development, Icahn Institute for Genomics and Multiscale Biology, Department of Genetics and Genomics Sciences, Icahn School of Medicine at Mount Sinai
Minor Variant Detection with Juliet
Roberto Lleras, Manager, Field Applications Scientist, Bioinformatics, PacBio
Structural Variant Detection with PBSV
Aaron Wenger, Ph.D., Staff Scientist, PacBio
Understanding, Curating, and Analyzing Your Diploid Genome Assembly
Sarah Kingan, Ph.D., Senior Scientist, Bioinformatics, PacBio
Chromosome-scale De Novo Assembly of Mammalian Genomes Using Chromatin Interaction Data
Jay Ghurye, Ph.D. Candidate, Department of Computer Science, University of Maryland
Keynote: Accurate Detection of Complex Structural Variation
Fritz J. Sedlazeck, Ph.D., Human Genome Sequencing Center, Baylor College of Medicine
Please note that not all speakers have given permission to share their presentations. Those that have are listed below.